Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DXE38_RS05500 Genome accession   NZ_LT992477
Coordinates   1095963..1096532 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 22_LA_562     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1090963..1101532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE38_RS05455 - 1091437..1092045 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  DXE38_RS05460 rplL 1092220..1092588 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DXE38_RS05465 rplJ 1092631..1093131 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  DXE38_RS05475 rplA 1093403..1094095 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  DXE38_RS05480 rplK 1094303..1094725 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  DXE38_RS05485 nusG 1094906..1095454 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DXE38_RS05490 secE 1095467..1095649 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DXE38_RS05495 rpmG 1095705..1095848 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  DXE38_RS05500 sigH 1095963..1096532 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  DXE38_RS05505 - 1096614..1097138 (-) 525 WP_114636036.1 NYN domain-containing protein -
  DXE38_RS05510 rlmB 1097138..1097884 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DXE38_RS05515 - 1097892..1098296 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  DXE38_RS05520 cysS 1098289..1099689 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  DXE38_RS05525 cysE 1099673..1100320 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1150131 DXE38_RS05500 WP_000872866.1 1095963..1096532(-) (sigH) [Staphylococcus aureus isolate 22_LA_562]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1150131 DXE38_RS05500 WP_000872866.1 1095963..1096532(-) (sigH) [Staphylococcus aureus isolate 22_LA_562]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment