Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE57_RS07285 Genome accession   NZ_LT992476
Coordinates   1385223..1385909 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 21_LA_436     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380223..1390909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE57_RS07250 yqeH 1380750..1381850 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  DXE57_RS07255 aroE 1381864..1382670 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE57_RS07260 yhbY 1382674..1382964 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE57_RS07265 nadD 1382967..1383536 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE57_RS07270 yqeK 1383526..1384110 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE57_RS07275 rsfS 1384111..1384464 (+) 354 WP_001088020.1 ribosome silencing factor -
  DXE57_RS07280 - 1384467..1385183 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE57_RS07285 comEA 1385223..1385909 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE57_RS07290 - 1386001..1386462 (+) 462 WP_000439690.1 ComE operon protein 2 -
  DXE57_RS07295 comEC 1386467..1388668 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE57_RS07300 holA 1388725..1389699 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE57_RS07305 rpsT 1389744..1389995 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1150082 DXE57_RS07285 WP_001825349.1 1385223..1385909(+) (comEA) [Staphylococcus aureus isolate 21_LA_436]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1150082 DXE57_RS07285 WP_001825349.1 1385223..1385909(+) (comEA) [Staphylococcus aureus isolate 21_LA_436]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment