Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE57_RS04765 Genome accession   NZ_LT992476
Coordinates   921485..921880 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 21_LA_436     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 916485..926880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE57_RS04730 - 917654..918058 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DXE57_RS04745 - 918711..918944 (+) 234 WP_000384523.1 DUF1146 family protein -
  DXE57_RS04750 murA 919055..920320 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE57_RS04755 fabZ 920354..920794 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE57_RS04760 - 920851..921291 (-) 441 WP_000846746.1 YwpF-like family protein -
  DXE57_RS04765 ssb 921485..921880 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE57_RS04770 sceD 922269..922964 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE57_RS04775 tenA 923351..924040 (+) 690 WP_000396068.1 thiaminase II -
  DXE57_RS04780 thiD 924033..924863 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE57_RS04785 thiM 924847..925638 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE57_RS04790 thiE 925640..926281 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1150071 DXE57_RS04765 WP_000932694.1 921485..921880(+) (ssb) [Staphylococcus aureus isolate 21_LA_436]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1150071 DXE57_RS04765 WP_000932694.1 921485..921880(+) (ssb) [Staphylococcus aureus isolate 21_LA_436]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment