Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE41_RS04200 Genome accession   NZ_LT992475
Coordinates   746368..747054 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 20_LA_415     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741368..752054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE41_RS04165 yqeH 741895..742995 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  DXE41_RS04170 aroE 743009..743815 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE41_RS04175 yhbY 743819..744109 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE41_RS04180 nadD 744112..744681 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE41_RS04185 yqeK 744671..745255 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE41_RS04190 rsfS 745256..745609 (+) 354 WP_001088020.1 ribosome silencing factor -
  DXE41_RS04195 - 745612..746328 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE41_RS04200 comEA 746368..747054 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE41_RS04205 - 747146..747607 (+) 462 WP_000439690.1 ComE operon protein 2 -
  DXE41_RS04210 comEC 747612..749813 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE41_RS04215 holA 749870..750844 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE41_RS04220 rpsT 750889..751140 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1150033 DXE41_RS04200 WP_001825349.1 746368..747054(+) (comEA) [Staphylococcus aureus isolate 20_LA_415]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1150033 DXE41_RS04200 WP_001825349.1 746368..747054(+) (comEA) [Staphylococcus aureus isolate 20_LA_415]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment