Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE41_RS01345 Genome accession   NZ_LT992475
Coordinates   240922..241317 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 20_LA_415     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 235922..246317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE41_RS01310 - 237091..237495 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DXE41_RS01325 - 238148..238381 (+) 234 WP_000384523.1 DUF1146 family protein -
  DXE41_RS01330 murA 238492..239757 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE41_RS01335 fabZ 239791..240231 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE41_RS01340 - 240288..240728 (-) 441 WP_000846746.1 YwpF-like family protein -
  DXE41_RS01345 ssb 240922..241317 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE41_RS01350 sceD 241706..242401 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE41_RS01355 tenA 242788..243477 (+) 690 WP_000396068.1 thiaminase II -
  DXE41_RS01360 thiD 243470..244300 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE41_RS01365 thiM 244284..245075 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE41_RS01370 thiE 245077..245718 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1150021 DXE41_RS01345 WP_000932694.1 240922..241317(+) (ssb) [Staphylococcus aureus isolate 20_LA_415]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1150021 DXE41_RS01345 WP_000932694.1 240922..241317(+) (ssb) [Staphylococcus aureus isolate 20_LA_415]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment