Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE66_RS14295 Genome accession   NZ_LT992474
Coordinates   2775102..2775497 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 19_LA_388     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2770102..2780497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE66_RS14270 thiE 2770701..2771342 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  DXE66_RS14275 thiM 2771344..2772135 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE66_RS14280 thiD 2772119..2772949 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE66_RS14285 tenA 2772942..2773631 (-) 690 WP_000396068.1 thiaminase II -
  DXE66_RS14290 sceD 2774018..2774713 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE66_RS14295 ssb 2775102..2775497 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE66_RS14300 - 2775691..2776131 (+) 441 WP_000846746.1 YwpF-like family protein -
  DXE66_RS14305 fabZ 2776188..2776628 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE66_RS14310 murA 2776662..2777927 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE66_RS14315 - 2778038..2778271 (-) 234 WP_000384523.1 DUF1146 family protein -
  DXE66_RS14330 - 2778924..2779328 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1150016 DXE66_RS14295 WP_000932694.1 2775102..2775497(-) (ssb) [Staphylococcus aureus isolate 19_LA_388]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1150016 DXE66_RS14295 WP_000932694.1 2775102..2775497(-) (ssb) [Staphylococcus aureus isolate 19_LA_388]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment