Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE48_RS12965 Genome accession   NZ_LT992473
Coordinates   2570921..2571316 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 14_5418     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2565921..2576316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE48_RS12930 - 2567090..2567494 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DXE48_RS12945 - 2568147..2568380 (+) 234 WP_000384523.1 DUF1146 family protein -
  DXE48_RS12950 murA 2568491..2569756 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE48_RS12955 fabZ 2569790..2570230 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE48_RS12960 - 2570287..2570727 (-) 441 WP_000846746.1 YwpF-like family protein -
  DXE48_RS12965 ssb 2570921..2571316 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE48_RS12970 sceD 2571705..2572400 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE48_RS12975 tenA 2572787..2573476 (+) 690 WP_000396068.1 thiaminase II -
  DXE48_RS12980 thiD 2573469..2574299 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE48_RS12985 thiM 2574283..2575074 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE48_RS12990 thiE 2575076..2575717 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149969 DXE48_RS12965 WP_000932694.1 2570921..2571316(+) (ssb) [Staphylococcus aureus isolate 14_5418]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149969 DXE48_RS12965 WP_000932694.1 2570921..2571316(+) (ssb) [Staphylococcus aureus isolate 14_5418]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment