Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE48_RS01165 Genome accession   NZ_LT992473
Coordinates   233862..234548 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 14_5418     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 228862..239548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE48_RS01130 yqeH 229389..230489 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  DXE48_RS01135 aroE 230503..231309 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE48_RS01140 yhbY 231313..231603 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE48_RS01145 nadD 231606..232175 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE48_RS01150 yqeK 232165..232749 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE48_RS01155 rsfS 232750..233103 (+) 354 WP_001088020.1 ribosome silencing factor -
  DXE48_RS01160 - 233106..233822 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE48_RS01165 comEA 233862..234548 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE48_RS01170 - 234640..235101 (+) 462 WP_000439690.1 ComE operon protein 2 -
  DXE48_RS01175 comEC 235106..237307 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE48_RS01180 holA 237364..238338 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE48_RS01185 rpsT 238383..238634 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149937 DXE48_RS01165 WP_001825349.1 233862..234548(+) (comEA) [Staphylococcus aureus isolate 14_5418]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149937 DXE48_RS01165 WP_001825349.1 233862..234548(+) (comEA) [Staphylococcus aureus isolate 14_5418]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment