Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DXE26_RS07835 Genome accession   NZ_LT992472
Coordinates   1518725..1519294 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 10_5235     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513725..1524294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE26_RS07810 cysE 1514937..1515584 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  DXE26_RS07815 cysS 1515568..1516968 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  DXE26_RS07820 - 1516961..1517365 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  DXE26_RS07825 rlmB 1517373..1518119 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DXE26_RS07830 - 1518119..1518643 (+) 525 WP_000664738.1 NYN domain-containing protein -
  DXE26_RS07835 sigH 1518725..1519294 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  DXE26_RS07840 rpmG 1519409..1519552 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  DXE26_RS07845 secE 1519608..1519790 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DXE26_RS07850 nusG 1519803..1520351 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DXE26_RS07855 rplK 1520532..1520954 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  DXE26_RS07860 rplA 1521162..1521854 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  DXE26_RS07870 rplJ 1522126..1522626 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  DXE26_RS07875 rplL 1522669..1523037 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DXE26_RS07880 - 1523212..1523820 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1149903 DXE26_RS07835 WP_000872866.1 1518725..1519294(+) (sigH) [Staphylococcus aureus isolate 10_5235]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1149903 DXE26_RS07835 WP_000872866.1 1518725..1519294(+) (sigH) [Staphylococcus aureus isolate 10_5235]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment