Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE26_RS01605 Genome accession   NZ_LT992472
Coordinates   282439..282834 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 10_5235     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 277439..287834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE26_RS01580 thiE 278038..278679 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  DXE26_RS01585 thiM 278681..279472 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE26_RS01590 thiD 279456..280286 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE26_RS01595 tenA 280279..280968 (-) 690 WP_000396068.1 thiaminase II -
  DXE26_RS01600 sceD 281355..282050 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE26_RS01605 ssb 282439..282834 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE26_RS01610 - 283028..283468 (+) 441 WP_000846746.1 YwpF-like family protein -
  DXE26_RS01615 fabZ 283525..283965 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE26_RS01620 murA 283999..285264 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE26_RS01625 - 285375..285608 (-) 234 WP_000384523.1 DUF1146 family protein -
  DXE26_RS01640 - 286261..286665 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149893 DXE26_RS01605 WP_000932694.1 282439..282834(-) (ssb) [Staphylococcus aureus isolate 10_5235]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149893 DXE26_RS01605 WP_000932694.1 282439..282834(-) (ssb) [Staphylococcus aureus isolate 10_5235]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment