Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE46_RS11870 Genome accession   NZ_LT992471
Coordinates   2282440..2282835 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 17_LA_343     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2277440..2287835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE46_RS11845 thiE 2278039..2278680 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  DXE46_RS11850 thiM 2278682..2279473 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE46_RS11855 thiD 2279457..2280287 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE46_RS11860 tenA 2280280..2280969 (-) 690 WP_000396068.1 thiaminase II -
  DXE46_RS11865 sceD 2281356..2282051 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE46_RS11870 ssb 2282440..2282835 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE46_RS11875 - 2283029..2283469 (+) 441 WP_000846746.1 YwpF-like family protein -
  DXE46_RS11880 fabZ 2283526..2283966 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE46_RS11885 murA 2284000..2285265 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE46_RS11890 - 2285376..2285609 (-) 234 WP_000384523.1 DUF1146 family protein -
  DXE46_RS11905 - 2286262..2286666 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149884 DXE46_RS11870 WP_000932694.1 2282440..2282835(-) (ssb) [Staphylococcus aureus isolate 17_LA_343]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149884 DXE46_RS11870 WP_000932694.1 2282440..2282835(-) (ssb) [Staphylococcus aureus isolate 17_LA_343]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment