Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE64_RS12620 Genome accession   NZ_LT992470
Coordinates   2474637..2475032 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 13_LA_301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2469637..2480032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE64_RS12585 - 2470806..2471210 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DXE64_RS12600 - 2471863..2472096 (+) 234 WP_000384523.1 DUF1146 family protein -
  DXE64_RS12605 murA 2472207..2473472 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE64_RS12610 fabZ 2473506..2473946 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE64_RS12615 - 2474003..2474443 (-) 441 WP_000846746.1 YwpF-like family protein -
  DXE64_RS12620 ssb 2474637..2475032 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE64_RS12625 sceD 2475421..2476116 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE64_RS12630 tenA 2476503..2477192 (+) 690 WP_000396068.1 thiaminase II -
  DXE64_RS12635 thiD 2477185..2478015 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE64_RS12640 thiM 2477999..2478790 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE64_RS12645 thiE 2478792..2479433 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149835 DXE64_RS12620 WP_000932694.1 2474637..2475032(+) (ssb) [Staphylococcus aureus isolate 13_LA_301]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149835 DXE64_RS12620 WP_000932694.1 2474637..2475032(+) (ssb) [Staphylococcus aureus isolate 13_LA_301]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment