Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE64_RS00700 Genome accession   NZ_LT992470
Coordinates   137610..138296 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 13_LA_301     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 132610..143296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE64_RS00665 yqeH 133137..134237 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  DXE64_RS00670 aroE 134251..135057 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE64_RS00675 yhbY 135061..135351 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE64_RS00680 nadD 135354..135923 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE64_RS00685 yqeK 135913..136497 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE64_RS00690 rsfS 136498..136851 (+) 354 WP_001088020.1 ribosome silencing factor -
  DXE64_RS00695 - 136854..137570 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE64_RS00700 comEA 137610..138296 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE64_RS00705 - 138388..138849 (+) 462 WP_000439690.1 ComE operon protein 2 -
  DXE64_RS00710 comEC 138854..141055 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE64_RS00715 holA 141112..142086 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE64_RS00720 rpsT 142131..142382 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149803 DXE64_RS00700 WP_001825349.1 137610..138296(+) (comEA) [Staphylococcus aureus isolate 13_LA_301]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149803 DXE64_RS00700 WP_001825349.1 137610..138296(+) (comEA) [Staphylococcus aureus isolate 13_LA_301]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment