Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DXE36_RS09025 Genome accession   NZ_LT992469
Coordinates   1715128..1715697 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 15_LA_305     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1710128..1720697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE36_RS08980 - 1710602..1711210 (-) 609 WP_031794927.1 class I SAM-dependent methyltransferase -
  DXE36_RS08985 rplL 1711385..1711753 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DXE36_RS08990 rplJ 1711796..1712296 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  DXE36_RS09000 rplA 1712568..1713260 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  DXE36_RS09005 rplK 1713468..1713890 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  DXE36_RS09010 nusG 1714071..1714619 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DXE36_RS09015 secE 1714632..1714814 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DXE36_RS09020 rpmG 1714870..1715013 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  DXE36_RS09025 sigH 1715128..1715697 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  DXE36_RS09030 - 1715779..1716303 (-) 525 WP_000664738.1 NYN domain-containing protein -
  DXE36_RS09035 rlmB 1716303..1717049 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DXE36_RS09040 - 1717057..1717461 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  DXE36_RS09045 cysS 1717454..1718854 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  DXE36_RS09050 cysE 1718838..1719485 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1149789 DXE36_RS09025 WP_000872866.1 1715128..1715697(-) (sigH) [Staphylococcus aureus isolate 15_LA_305]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1149789 DXE36_RS09025 WP_000872866.1 1715128..1715697(-) (sigH) [Staphylococcus aureus isolate 15_LA_305]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment