Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE36_RS03440 Genome accession   NZ_LT992469
Coordinates   612404..613090 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 15_LA_305     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607404..618090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE36_RS03405 yqeH 607931..609031 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  DXE36_RS03410 aroE 609045..609851 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE36_RS03415 yhbY 609855..610145 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE36_RS03420 nadD 610148..610717 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE36_RS03425 yqeK 610707..611291 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE36_RS03430 rsfS 611292..611645 (+) 354 WP_001088020.1 ribosome silencing factor -
  DXE36_RS03435 - 611648..612364 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE36_RS03440 comEA 612404..613090 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE36_RS03445 - 613182..613643 (+) 462 WP_000439690.1 ComE operon protein 2 -
  DXE36_RS03450 comEC 613648..615849 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE36_RS03455 holA 615906..616880 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE36_RS03460 rpsT 616925..617176 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149767 DXE36_RS03440 WP_001825349.1 612404..613090(+) (comEA) [Staphylococcus aureus isolate 15_LA_305]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149767 DXE36_RS03440 WP_001825349.1 612404..613090(+) (comEA) [Staphylococcus aureus isolate 15_LA_305]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment