Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE36_RS00675 Genome accession   NZ_LT992469
Coordinates   123448..123843 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 15_LA_305     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 118448..128843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE36_RS00640 - 119617..120021 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DXE36_RS00655 - 120674..120907 (+) 234 WP_000384523.1 DUF1146 family protein -
  DXE36_RS00660 murA 121018..122283 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE36_RS00665 fabZ 122317..122757 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE36_RS00670 - 122814..123254 (-) 441 WP_000846746.1 YwpF-like family protein -
  DXE36_RS00675 ssb 123448..123843 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE36_RS00680 sceD 124232..124927 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE36_RS00685 tenA 125314..126003 (+) 690 WP_000396068.1 thiaminase II -
  DXE36_RS00690 thiD 125996..126826 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE36_RS00695 thiM 126810..127601 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE36_RS00700 thiE 127603..128244 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149756 DXE36_RS00675 WP_000932694.1 123448..123843(+) (ssb) [Staphylococcus aureus isolate 15_LA_305]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149756 DXE36_RS00675 WP_000932694.1 123448..123843(+) (ssb) [Staphylococcus aureus isolate 15_LA_305]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment