Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE47_RS03880 Genome accession   NZ_LT992468
Coordinates   661320..661715 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 12_LA_293     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 656320..666715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE47_RS03855 thiE 656919..657560 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  DXE47_RS03860 thiM 657562..658353 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE47_RS03865 thiD 658337..659167 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE47_RS03870 tenA 659160..659849 (-) 690 WP_000396068.1 thiaminase II -
  DXE47_RS03875 sceD 660236..660931 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE47_RS03880 ssb 661320..661715 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE47_RS03885 - 661909..662349 (+) 441 WP_000846746.1 YwpF-like family protein -
  DXE47_RS03890 fabZ 662406..662846 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE47_RS03895 murA 662880..664145 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE47_RS03900 - 664256..664489 (-) 234 WP_000384523.1 DUF1146 family protein -
  DXE47_RS03915 - 665142..665546 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149730 DXE47_RS03880 WP_000932694.1 661320..661715(-) (ssb) [Staphylococcus aureus isolate 12_LA_293]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149730 DXE47_RS03880 WP_000932694.1 661320..661715(-) (ssb) [Staphylococcus aureus isolate 12_LA_293]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment