Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE47_RS00730 Genome accession   NZ_LT992468
Coordinates   118335..119021 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 12_LA_293     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 113335..124021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE47_RS00710 rpsT 114249..114500 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  DXE47_RS00715 holA 114545..115519 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE47_RS00720 comEC 115576..117777 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE47_RS00725 - 117782..118243 (-) 462 WP_000439690.1 ComE operon protein 2 -
  DXE47_RS00730 comEA 118335..119021 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE47_RS00735 - 119061..119777 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE47_RS00740 rsfS 119780..120133 (-) 354 WP_001088020.1 ribosome silencing factor -
  DXE47_RS00745 yqeK 120134..120718 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE47_RS00750 nadD 120708..121277 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE47_RS00755 yhbY 121280..121570 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE47_RS00760 aroE 121574..122380 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE47_RS00765 yqeH 122394..123494 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149718 DXE47_RS00730 WP_001825349.1 118335..119021(-) (comEA) [Staphylococcus aureus isolate 12_LA_293]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149718 DXE47_RS00730 WP_001825349.1 118335..119021(-) (comEA) [Staphylococcus aureus isolate 12_LA_293]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment