Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE59_RS00985 Genome accession   NZ_LT992467
Coordinates   215221..215907 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 16_LA_309     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 210221..220907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE59_RS00965 rpsT 211135..211386 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  DXE59_RS00970 holA 211431..212405 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE59_RS00975 comEC 212462..214663 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE59_RS00980 - 214668..215129 (-) 462 WP_000439690.1 ComE operon protein 2 -
  DXE59_RS00985 comEA 215221..215907 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE59_RS00990 - 215947..216663 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE59_RS00995 rsfS 216666..217019 (-) 354 WP_001088020.1 ribosome silencing factor -
  DXE59_RS01000 yqeK 217020..217604 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE59_RS01005 nadD 217594..218163 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE59_RS01010 yhbY 218166..218456 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE59_RS01015 aroE 218460..219266 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE59_RS01020 yqeH 219280..220380 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149675 DXE59_RS00985 WP_001825349.1 215221..215907(-) (comEA) [Staphylococcus aureus isolate 16_LA_309]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149675 DXE59_RS00985 WP_001825349.1 215221..215907(-) (comEA) [Staphylococcus aureus isolate 16_LA_309]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment