Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE30_RS07390 Genome accession   NZ_LT992466
Coordinates   1424393..1425079 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 4_LA_208     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1419393..1430079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE30_RS07355 yqeH 1419920..1421020 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  DXE30_RS07360 aroE 1421034..1421840 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE30_RS07365 yhbY 1421844..1422134 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE30_RS07370 nadD 1422137..1422706 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE30_RS07375 yqeK 1422696..1423280 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE30_RS07380 rsfS 1423281..1423634 (+) 354 WP_001088020.1 ribosome silencing factor -
  DXE30_RS07385 - 1423637..1424353 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE30_RS07390 comEA 1424393..1425079 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE30_RS07395 - 1425171..1425632 (+) 462 WP_000439690.1 ComE operon protein 2 -
  DXE30_RS07400 comEC 1425637..1427838 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE30_RS07405 holA 1427895..1428869 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE30_RS07410 rpsT 1428914..1429165 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149639 DXE30_RS07390 WP_001825349.1 1424393..1425079(+) (comEA) [Staphylococcus aureus isolate 4_LA_208]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149639 DXE30_RS07390 WP_001825349.1 1424393..1425079(+) (comEA) [Staphylococcus aureus isolate 4_LA_208]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment