Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE30_RS04625 Genome accession   NZ_LT992466
Coordinates   929691..930086 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 4_LA_208     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 924691..935086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE30_RS04590 - 925860..926264 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DXE30_RS04605 - 926917..927150 (+) 234 WP_000384523.1 DUF1146 family protein -
  DXE30_RS04610 murA 927261..928526 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE30_RS04615 fabZ 928560..929000 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE30_RS04620 - 929057..929497 (-) 441 WP_000846746.1 YwpF-like family protein -
  DXE30_RS04625 ssb 929691..930086 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE30_RS04630 sceD 930475..931170 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE30_RS04635 tenA 931557..932246 (+) 690 WP_000396068.1 thiaminase II -
  DXE30_RS04640 thiD 932239..933069 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE30_RS04645 thiM 933053..933844 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE30_RS04650 thiE 933846..934487 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149627 DXE30_RS04625 WP_000932694.1 929691..930086(+) (ssb) [Staphylococcus aureus isolate 4_LA_208]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149627 DXE30_RS04625 WP_000932694.1 929691..930086(+) (ssb) [Staphylococcus aureus isolate 4_LA_208]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment