Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE62_RS12110 Genome accession   NZ_LT992465
Coordinates   2392253..2392648 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 6_LA_232     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2387253..2397648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE62_RS12075 - 2388422..2388826 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DXE62_RS12090 - 2389479..2389712 (+) 234 WP_000384523.1 DUF1146 family protein -
  DXE62_RS12095 murA 2389823..2391088 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE62_RS12100 fabZ 2391122..2391562 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE62_RS12105 - 2391619..2392059 (-) 441 WP_000846746.1 YwpF-like family protein -
  DXE62_RS12110 ssb 2392253..2392648 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE62_RS12115 sceD 2393037..2393732 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE62_RS12120 tenA 2394119..2394808 (+) 690 WP_000396068.1 thiaminase II -
  DXE62_RS12125 thiD 2394801..2395631 (+) 831 WP_031885471.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE62_RS12130 thiM 2395615..2396406 (+) 792 WP_031885470.1 hydroxyethylthiazole kinase -
  DXE62_RS12135 thiE 2396408..2397049 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149611 DXE62_RS12110 WP_000932694.1 2392253..2392648(+) (ssb) [Staphylococcus aureus isolate 6_LA_232]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149611 DXE62_RS12110 WP_000932694.1 2392253..2392648(+) (ssb) [Staphylococcus aureus isolate 6_LA_232]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment