Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE56_RS05320 Genome accession   NZ_LT992464
Coordinates   963243..963929 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 3_LA_115     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 958243..968929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE56_RS05285 yqeH 958770..959870 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  DXE56_RS05290 aroE 959884..960690 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE56_RS05295 yhbY 960694..960984 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE56_RS05300 nadD 960987..961556 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE56_RS05305 yqeK 961546..962130 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE56_RS05310 rsfS 962131..962484 (+) 354 WP_001088020.1 ribosome silencing factor -
  DXE56_RS05315 - 962487..963203 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE56_RS05320 comEA 963243..963929 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE56_RS05325 - 964021..964482 (+) 462 WP_000439690.1 ComE operon protein 2 -
  DXE56_RS05330 comEC 964487..966688 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE56_RS05335 holA 966745..967719 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE56_RS05340 rpsT 967764..968015 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149547 DXE56_RS05320 WP_001825349.1 963243..963929(+) (comEA) [Staphylococcus aureus isolate 3_LA_115]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149547 DXE56_RS05320 WP_001825349.1 963243..963929(+) (comEA) [Staphylococcus aureus isolate 3_LA_115]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment