Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE56_RS02475 Genome accession   NZ_LT992464
Coordinates   458189..458584 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 3_LA_115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 453189..463584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE56_RS02440 - 454358..454762 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DXE56_RS02455 - 455415..455648 (+) 234 WP_000384523.1 DUF1146 family protein -
  DXE56_RS02460 murA 455759..457024 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE56_RS02465 fabZ 457058..457498 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE56_RS02470 - 457555..457995 (-) 441 WP_000846746.1 YwpF-like family protein -
  DXE56_RS02475 ssb 458189..458584 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE56_RS02480 sceD 458973..459668 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE56_RS02485 tenA 460055..460744 (+) 690 WP_000396068.1 thiaminase II -
  DXE56_RS02490 thiD 460737..461567 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE56_RS02495 thiM 461551..462342 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE56_RS02500 thiE 462344..462985 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149535 DXE56_RS02475 WP_000932694.1 458189..458584(+) (ssb) [Staphylococcus aureus isolate 3_LA_115]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149535 DXE56_RS02475 WP_000932694.1 458189..458584(+) (ssb) [Staphylococcus aureus isolate 3_LA_115]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment