Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE29_RS11800 Genome accession   NZ_LT992463
Coordinates   2329893..2330288 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 2_LA_86     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2324893..2335288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE29_RS11775 thiE 2325492..2326133 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  DXE29_RS11780 thiM 2326135..2326926 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE29_RS11785 thiD 2326910..2327740 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE29_RS11790 tenA 2327733..2328422 (-) 690 WP_000396068.1 thiaminase II -
  DXE29_RS11795 sceD 2328809..2329504 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE29_RS11800 ssb 2329893..2330288 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE29_RS11805 - 2330482..2330922 (+) 441 WP_000846746.1 YwpF-like family protein -
  DXE29_RS11810 fabZ 2330979..2331419 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE29_RS11815 murA 2331453..2332718 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE29_RS11820 - 2332829..2333062 (-) 234 WP_000384523.1 DUF1146 family protein -
  DXE29_RS11835 - 2333715..2334119 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149529 DXE29_RS11800 WP_000932694.1 2329893..2330288(-) (ssb) [Staphylococcus aureus isolate 2_LA_86]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149529 DXE29_RS11800 WP_000932694.1 2329893..2330288(-) (ssb) [Staphylococcus aureus isolate 2_LA_86]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment