Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE29_RS09285 Genome accession   NZ_LT992463
Coordinates   1866008..1866694 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 2_LA_86     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1861008..1871694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE29_RS09265 rpsT 1861922..1862173 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  DXE29_RS09270 holA 1862218..1863192 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE29_RS09275 comEC 1863249..1865450 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE29_RS09280 - 1865455..1865916 (-) 462 WP_000439690.1 ComE operon protein 2 -
  DXE29_RS09285 comEA 1866008..1866694 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE29_RS09290 - 1866734..1867450 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE29_RS09295 rsfS 1867453..1867806 (-) 354 WP_001088020.1 ribosome silencing factor -
  DXE29_RS09300 yqeK 1867807..1868391 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE29_RS09305 nadD 1868381..1868950 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE29_RS09310 yhbY 1868953..1869243 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE29_RS09315 aroE 1869247..1870053 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE29_RS09320 yqeH 1870067..1871167 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149518 DXE29_RS09285 WP_001825349.1 1866008..1866694(-) (comEA) [Staphylococcus aureus isolate 2_LA_86]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149518 DXE29_RS09285 WP_001825349.1 1866008..1866694(-) (comEA) [Staphylococcus aureus isolate 2_LA_86]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment