Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   W903_RS04350 Genome accession   NZ_CP006910
Coordinates   808170..809975 (+) Length   601 a.a.
NCBI ID   WP_001282895.1    Uniprot ID   -
Organism   Streptococcus agalactiae CNCTC 10/84     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 803170..814975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W903_RS04325 (W903_0891) - 803387..804088 (+) 702 WP_001263962.1 glucosamine-6-phosphate deaminase -
  W903_RS04330 (W903_0892) - 804160..805116 (-) 957 WP_000523783.1 glutathione S-transferase family protein -
  W903_RS04335 (W903_0893) - 805212..805931 (+) 720 WP_001234961.1 16S rRNA pseudouridine(516) synthase -
  W903_RS04340 (W903_0894) - 806004..807155 (+) 1152 WP_001086199.1 MFS transporter -
  W903_RS04345 (W903_0895) coiA 807207..808154 (+) 948 WP_000903651.1 competence protein CoiA Machinery gene
  W903_RS04350 (W903_0896) pepF 808170..809975 (+) 1806 WP_001282895.1 oligoendopeptidase F Regulator
  W903_RS04355 (W903_0897) - 810169..810795 (+) 627 WP_000736930.1 HAD hydrolase-like protein -
  W903_RS04360 (W903_0898) - 810869..811576 (+) 708 WP_000250859.1 O-methyltransferase -
  W903_RS04365 (W903_0899) prsA 811637..812566 (+) 930 WP_000857817.1 peptidylprolyl isomerase PrsA -
  W903_RS04370 (W903_0900) - 812808..813293 (+) 486 WP_000190194.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69605.55 Da        Isoelectric Point: 4.6268

>NTDB_id=114950 W903_RS04350 WP_001282895.1 808170..809975(+) (pepF) [Streptococcus agalactiae CNCTC 10/84]
MSDNRSHIEEKYQWDLTTVFATDELWETEVVELTQAIDDAKGFSGHLLDSSQSLLEITEVELDLSRRLEKVYVYASMKND
QDTTVAKYQEFQAKATALYAKFSETFSFYEPELLQLSESDYQSFLLEMPDLQKYDHFFEKIFANKPHVLSQNEEELLAGA
SEIFGAAGETFEILDNADMVFPVVKNAKGEEVELTHGNFISLMESSDRTVRKEAYQAMYSTYEQFQHTYAKTLQTNVKSQ
NFKARVHHYQSARQSALSANFIPEEVYETLIKTVNHHLPLLHRYMKLRQKVLGLDDLKMYDVYTPLSQMDMSFTYDEALK
KSEEVLAIFGEAYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVKDDKNRFAILNHYLDGFKGTIFRQTQFAEFEHAIHVADQEGQVLTSEY
LNNLYAELNEKYYGLTKEDNHFIQYEWARIPHFYYNYYVFQYATGFAAANYLAERIVNGNPEDKEAYLNYLKAGNSDYPL
NVIAKAGVDMTSADYLDAAFRVFEERLVELENLVAKGVHND

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=114950 W903_RS04350 WP_001282895.1 808170..809975(+) (pepF) [Streptococcus agalactiae CNCTC 10/84]
ATGTCAGACAATCGCTCACATATTGAAGAAAAATACCAATGGGATTTAACTACTGTCTTTGCGACTGATGAGTTATGGGA
AACTGAAGTGGTAGAGCTTACTCAAGCCATCGATGACGCAAAGGGGTTTTCAGGTCATCTGTTGGACTCAAGCCAATCTT
TATTGGAGATCACGGAGGTTGAACTAGATTTATCTCGCCGTTTAGAAAAAGTTTATGTCTATGCTTCAATGAAAAATGAC
CAAGACACCACTGTTGCGAAATATCAAGAATTTCAAGCGAAAGCGACAGCGCTCTATGCAAAATTTAGTGAAACATTTTC
GTTTTACGAGCCAGAACTATTGCAACTTTCAGAGTCTGATTACCAGTCATTCCTTTTAGAAATGCCTGACTTGCAAAAAT
ATGATCATTTCTTTGAGAAAATATTTGCAAATAAACCTCATGTCTTATCTCAAAACGAAGAAGAATTGTTAGCTGGTGCT
AGTGAGATTTTTGGAGCAGCTGGTGAGACATTTGAAATCCTTGATAATGCAGATATGGTCTTCCCAGTTGTAAAAAATGC
AAAAGGTGAGGAAGTTGAGCTTACACATGGTAATTTCATTTCCCTTATGGAATCTAGCGATAGGACGGTTCGAAAAGAAG
CATATCAAGCTATGTATAGCACATATGAACAATTCCAGCATACTTACGCTAAAACATTACAAACAAATGTGAAATCTCAA
AATTTTAAAGCTCGTGTACATCATTATCAATCAGCACGCCAATCAGCTCTATCTGCCAATTTTATTCCAGAAGAGGTCTA
CGAAACTCTAATTAAGACAGTTAATCATCATTTACCGCTCTTACACCGTTATATGAAGTTGCGTCAAAAAGTTCTTGGGC
TAGATGATTTGAAGATGTATGACGTCTATACACCCCTTTCTCAAATGGATATGAGTTTTACTTATGATGAAGCTCTAAAA
AAATCAGAGGAGGTTCTGGCTATTTTTGGCGAAGCATATTCTGAACGTGTTCATCGTGCTTTTACTGAACGTTGGATTGA
TGTCCATGTTAACAAAGGAAAGAGGTCAGGCGCTTATTCAGGTGGATCTTATGACACTAATGCTTTCATGCTTCTTAACT
GGCAAGATACTTTAGACAATCTTTATACGCTGGTGCATGAAACTGGACATAGTCTACACTCGACGTTTACTCGTGAAAAT
CAACCCTATGTTTATGGTGATTATTCTATTTTCCTAGCTGAAATTGCATCAACAACAAATGAAAATATATTAACAGAAAC
CCTTTTGAAAGAAGTTAAAGATGATAAAAATCGCTTTGCAATTCTCAATCATTATTTGGACGGTTTCAAAGGAACAATTT
TTAGACAAACACAGTTCGCTGAATTCGAACATGCCATTCATGTAGCTGATCAGGAGGGGCAAGTACTAACTAGCGAATAC
TTAAACAACCTTTACGCTGAGCTTAATGAAAAATATTATGGTTTGACTAAAGAAGATAATCATTTTATTCAATATGAATG
GGCAAGAATTCCACACTTTTACTACAATTATTATGTTTTCCAATATGCAACCGGCTTCGCAGCAGCAAATTATTTAGCAG
AGCGTATTGTAAACGGTAATCCGGAGGATAAAGAGGCCTACCTAAATTACCTTAAAGCTGGTAATTCAGATTACCCTCTA
AACGTCATTGCTAAAGCTGGTGTTGATATGACTAGTGCAGACTATCTGGATGCAGCTTTTAGAGTATTTGAAGAGCGTTT
AGTGGAACTTGAAAATCTTGTAGCAAAAGGCGTCCATAATGATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.452

99.667

0.712

Multiple sequence alignment