Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE65_RS10225 Genome accession   NZ_LT992462
Coordinates   1912164..1912559 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 5_3949     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1907164..1917559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE65_RS10200 thiE 1907763..1908404 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  DXE65_RS10205 thiM 1908406..1909197 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE65_RS10210 thiD 1909181..1910011 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE65_RS10215 tenA 1910004..1910693 (-) 690 WP_000396068.1 thiaminase II -
  DXE65_RS10220 sceD 1911080..1911775 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE65_RS10225 ssb 1912164..1912559 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE65_RS10230 - 1912753..1913193 (+) 441 WP_000846746.1 YwpF-like family protein -
  DXE65_RS10235 fabZ 1913250..1913690 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE65_RS10240 murA 1913724..1914989 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE65_RS10245 - 1915100..1915333 (-) 234 WP_000384523.1 DUF1146 family protein -
  DXE65_RS10260 - 1915986..1916390 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149482 DXE65_RS10225 WP_000932694.1 1912164..1912559(-) (ssb) [Staphylococcus aureus isolate 5_3949]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149482 DXE65_RS10225 WP_000932694.1 1912164..1912559(-) (ssb) [Staphylococcus aureus isolate 5_3949]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment