Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE65_RS07655 Genome accession   NZ_LT992462
Coordinates   1435995..1436681 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 5_3949     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1430995..1441681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE65_RS07635 rpsT 1431909..1432160 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  DXE65_RS07640 holA 1432205..1433179 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE65_RS07645 comEC 1433236..1435437 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE65_RS07650 - 1435442..1435903 (-) 462 WP_000439690.1 ComE operon protein 2 -
  DXE65_RS07655 comEA 1435995..1436681 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE65_RS07660 - 1436721..1437437 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE65_RS07665 rsfS 1437440..1437793 (-) 354 WP_001088020.1 ribosome silencing factor -
  DXE65_RS07670 yqeK 1437794..1438378 (-) 585 WP_114667515.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE65_RS07675 nadD 1438368..1438937 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE65_RS07680 yhbY 1438940..1439230 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE65_RS07685 aroE 1439234..1440040 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE65_RS07690 yqeH 1440054..1441154 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149471 DXE65_RS07655 WP_001825349.1 1435995..1436681(-) (comEA) [Staphylococcus aureus isolate 5_3949]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149471 DXE65_RS07655 WP_001825349.1 1435995..1436681(-) (comEA) [Staphylococcus aureus isolate 5_3949]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment