Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE60_RS01865 Genome accession   NZ_LT992461
Coordinates   300965..301360 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 8_LA_272     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 295965..306360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE60_RS01840 thiE 296564..297205 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  DXE60_RS01845 thiM 297207..297998 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE60_RS01850 thiD 297982..298812 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE60_RS01855 tenA 298805..299494 (-) 690 WP_000396068.1 thiaminase II -
  DXE60_RS01860 sceD 299881..300576 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE60_RS01865 ssb 300965..301360 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE60_RS01870 - 301554..301994 (+) 441 WP_000846746.1 YwpF-like family protein -
  DXE60_RS01875 fabZ 302051..302491 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE60_RS01880 murA 302525..303790 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE60_RS01885 - 303901..304134 (-) 234 WP_000384523.1 DUF1146 family protein -
  DXE60_RS01900 - 304787..305191 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149404 DXE60_RS01865 WP_000932694.1 300965..301360(-) (ssb) [Staphylococcus aureus isolate 8_LA_272]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149404 DXE60_RS01865 WP_000932694.1 300965..301360(-) (ssb) [Staphylococcus aureus isolate 8_LA_272]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment