Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE39_RS11240 Genome accession   NZ_LT992460
Coordinates   2123913..2124599 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 9_LA_281     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2118913..2129599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE39_RS11205 yqeH 2119440..2120540 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  DXE39_RS11210 aroE 2120554..2121360 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE39_RS11215 yhbY 2121364..2121654 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE39_RS11220 nadD 2121657..2122226 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE39_RS11225 yqeK 2122216..2122800 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE39_RS11230 rsfS 2122801..2123154 (+) 354 WP_001088020.1 ribosome silencing factor -
  DXE39_RS11235 - 2123157..2123873 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE39_RS11240 comEA 2123913..2124599 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE39_RS11245 - 2124691..2125152 (+) 462 WP_000439690.1 ComE operon protein 2 -
  DXE39_RS11250 comEC 2125157..2127358 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE39_RS11255 holA 2127415..2128389 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE39_RS11260 rpsT 2128434..2128685 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149379 DXE39_RS11240 WP_001825349.1 2123913..2124599(+) (comEA) [Staphylococcus aureus isolate 9_LA_281]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149379 DXE39_RS11240 WP_001825349.1 2123913..2124599(+) (comEA) [Staphylococcus aureus isolate 9_LA_281]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment