Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE39_RS08390 Genome accession   NZ_LT992460
Coordinates   1618062..1618457 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 9_LA_281     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1613062..1623457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE39_RS08355 - 1614231..1614635 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DXE39_RS08370 - 1615288..1615521 (+) 234 WP_000384523.1 DUF1146 family protein -
  DXE39_RS08375 murA 1615632..1616897 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE39_RS08380 fabZ 1616931..1617371 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE39_RS08385 - 1617428..1617868 (-) 441 WP_000846746.1 YwpF-like family protein -
  DXE39_RS08390 ssb 1618062..1618457 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE39_RS08395 sceD 1618846..1619541 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE39_RS08400 tenA 1619928..1620617 (+) 690 WP_000396068.1 thiaminase II -
  DXE39_RS08405 thiD 1620610..1621440 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE39_RS08410 thiM 1621424..1622215 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE39_RS08415 thiE 1622217..1622858 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149368 DXE39_RS08390 WP_000932694.1 1618062..1618457(+) (ssb) [Staphylococcus aureus isolate 9_LA_281]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149368 DXE39_RS08390 WP_000932694.1 1618062..1618457(+) (ssb) [Staphylococcus aureus isolate 9_LA_281]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment