Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DXE63_RS09700 Genome accession   NZ_LT992458
Coordinates   1834969..1835415 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 7_4623     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829969..1840415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE63_RS09665 - 1830463..1830666 (+) 204 WP_000087559.1 YqgQ family protein -
  DXE63_RS09670 - 1830663..1831649 (+) 987 WP_000161315.1 ROK family glucokinase -
  DXE63_RS09675 - 1831649..1831978 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DXE63_RS09680 - 1831975..1832598 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DXE63_RS09685 comGA 1832650..1833624 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DXE63_RS09690 comGB 1833596..1834666 (+) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  DXE63_RS09695 comGC 1834680..1834991 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DXE63_RS09700 comGD 1834969..1835415 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  DXE63_RS09705 comGE 1835402..1835701 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  DXE63_RS09710 comGF 1835619..1836116 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  DXE63_RS09715 - 1836213..1836359 (+) 147 WP_001789879.1 hypothetical protein -
  DXE63_RS09720 - 1836349..1836873 (+) 525 WP_001015120.1 shikimate kinase -
  DXE63_RS09725 gcvT 1837032..1838123 (+) 1092 WP_114621347.1 glycine cleavage system aminomethyltransferase GcvT -
  DXE63_RS09730 gcvPA 1838143..1839489 (+) 1347 WP_031795510.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=1149336 DXE63_RS09700 WP_001796473.1 1834969..1835415(+) (comGD) [Staphylococcus aureus isolate 7_4623]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1149336 DXE63_RS09700 WP_001796473.1 1834969..1835415(+) (comGD) [Staphylococcus aureus isolate 7_4623]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment