Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DXE63_RS09455 Genome accession   NZ_LT992458
Coordinates   1788003..1788689 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 7_4623     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783003..1793689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE63_RS09420 yqeH 1783530..1784630 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  DXE63_RS09425 aroE 1784644..1785450 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  DXE63_RS09430 yhbY 1785454..1785744 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DXE63_RS09435 nadD 1785747..1786316 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DXE63_RS09440 yqeK 1786306..1786890 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DXE63_RS09445 rsfS 1786891..1787244 (+) 354 WP_001088020.1 ribosome silencing factor -
  DXE63_RS09450 - 1787247..1787963 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  DXE63_RS09455 comEA 1788003..1788689 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  DXE63_RS09460 - 1788781..1789242 (+) 462 WP_000439690.1 ComE operon protein 2 -
  DXE63_RS09465 comEC 1789247..1791448 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXE63_RS09470 holA 1791505..1792479 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DXE63_RS09475 rpsT 1792524..1792775 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149330 DXE63_RS09455 WP_001825349.1 1788003..1788689(+) (comEA) [Staphylococcus aureus isolate 7_4623]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149330 DXE63_RS09455 WP_001825349.1 1788003..1788689(+) (comEA) [Staphylococcus aureus isolate 7_4623]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment