Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE58_RS10015 Genome accession   NZ_LT992456
Coordinates   1975299..1975694 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1_1439     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1970299..1980694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE58_RS09980 - 1971468..1971872 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  DXE58_RS09995 - 1972525..1972758 (+) 234 WP_000384523.1 DUF1146 family protein -
  DXE58_RS10000 murA 1972869..1974134 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DXE58_RS10005 fabZ 1974168..1974608 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DXE58_RS10010 - 1974665..1975105 (-) 441 WP_000846746.1 YwpF-like family protein -
  DXE58_RS10015 ssb 1975299..1975694 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DXE58_RS10020 sceD 1976083..1976778 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  DXE58_RS10025 tenA 1977165..1977854 (+) 690 WP_000396068.1 thiaminase II -
  DXE58_RS10030 thiD 1977847..1978677 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DXE58_RS10035 thiM 1978661..1979452 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DXE58_RS10040 thiE 1979454..1980095 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149289 DXE58_RS10015 WP_000932694.1 1975299..1975694(+) (ssb) [Staphylococcus aureus isolate 1_1439]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149289 DXE58_RS10015 WP_000932694.1 1975299..1975694(+) (ssb) [Staphylococcus aureus isolate 1_1439]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment