Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DXE58_RS03765 Genome accession   NZ_LT992456
Coordinates   737587..738156 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1_1439     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 732587..743156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE58_RS03720 - 733061..733669 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  DXE58_RS03725 rplL 733844..734212 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DXE58_RS03730 rplJ 734255..734755 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  DXE58_RS03740 rplA 735027..735719 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  DXE58_RS03745 rplK 735927..736349 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  DXE58_RS03750 nusG 736530..737078 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DXE58_RS03755 secE 737091..737273 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DXE58_RS03760 rpmG 737329..737472 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  DXE58_RS03765 sigH 737587..738156 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  DXE58_RS03770 - 738238..738762 (-) 525 WP_000664738.1 NYN domain-containing protein -
  DXE58_RS03775 rlmB 738762..739508 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DXE58_RS03780 - 739516..739920 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  DXE58_RS03785 cysS 739913..741313 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  DXE58_RS03790 cysE 741297..741944 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1149279 DXE58_RS03765 WP_000872866.1 737587..738156(-) (sigH) [Staphylococcus aureus isolate 1_1439]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1149279 DXE58_RS03765 WP_000872866.1 737587..738156(-) (sigH) [Staphylococcus aureus isolate 1_1439]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment