Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DYY98_RS13820 Genome accession   NZ_LT992436
Coordinates   2693032..2694018 (+) Length   328 a.a.
NCBI ID   WP_000959271.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-REV     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2688032..2699018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY98_RS13795 opp4B 2688244..2689206 (+) 963 WP_000593421.1 oligopeptide ABC transporter permease -
  DYY98_RS13800 opp4C 2689218..2690099 (+) 882 WP_001180265.1 oligopeptide ABC transporter permease -
  DYY98_RS13805 trpS 2690141..2691130 (-) 990 WP_000448938.1 tryptophan--tRNA ligase -
  DYY98_RS13810 spxA 2691425..2691820 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  DYY98_RS13815 mecA 2692192..2692911 (+) 720 WP_001217728.1 adaptor protein MecA -
  DYY98_RS13820 coiA 2693032..2694018 (+) 987 WP_000959271.1 competence protein CoiA Machinery gene
  DYY98_RS13825 pepF 2694066..2695874 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  DYY98_RS13830 yjbH 2696334..2697140 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  DYY98_RS13835 - 2697163..2697528 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  DYY98_RS13840 - 2697632..2698225 (-) 594 WP_000224615.1 CYTH domain-containing protein -
  DYY98_RS13845 - 2698411..2698758 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38849.49 Da        Isoelectric Point: 9.7732

>NTDB_id=1149266 DYY98_RS13820 WP_000959271.1 2693032..2694018(+) (coiA) [Staphylococcus aureus isolate 1549-REV]
MLVALNEEKERVLATTALRKIKYFCPVCGKQVILKRGLKVISHFAHKHLTEQKCFNNESFKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSIFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSNR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1149266 DYY98_RS13820 WP_000959271.1 2693032..2694018(+) (coiA) [Staphylococcus aureus isolate 1549-REV]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGATAAAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAACGGAACAAAAAT
GTTTTAATAATGAATCGTTTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAACCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATATTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATACTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAAATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.037

100

0.96
  coiA Staphylococcus aureus MW2

95.732

100

0.957

Multiple sequence alignment