Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DYY98_RS11755 Genome accession   NZ_LT992436
Coordinates   2292125..2292694 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-REV     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2287125..2297694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY98_RS11730 cysE 2288338..2288985 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  DYY98_RS11735 cysS 2288969..2290369 (+) 1401 WP_000631980.1 cysteine--tRNA ligase -
  DYY98_RS11740 - 2290362..2290766 (+) 405 WP_000370179.1 Mini-ribonuclease 3 -
  DYY98_RS11745 rlmB 2290774..2291520 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DYY98_RS11750 - 2291520..2292044 (+) 525 WP_000664731.1 NYN domain-containing protein -
  DYY98_RS11755 sigH 2292125..2292694 (+) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  DYY98_RS11760 rpmG 2292809..2292952 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  DYY98_RS11765 secE 2293008..2293190 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DYY98_RS11770 nusG 2293203..2293751 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DYY98_RS11775 rplK 2293932..2294354 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  DYY98_RS11780 rplA 2294562..2295254 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  DYY98_RS11790 rplJ 2295526..2296026 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  DYY98_RS11795 rplL 2296069..2296437 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DYY98_RS11800 - 2296612..2297220 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=1149261 DYY98_RS11755 WP_000872878.1 2292125..2292694(+) (sigH) [Staphylococcus aureus isolate 1549-REV]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1149261 DYY98_RS11755 WP_000872878.1 2292125..2292694(+) (sigH) [Staphylococcus aureus isolate 1549-REV]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment