Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DYY96_RS11755 Genome accession   NZ_LT992435
Coordinates   2292124..2292693 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-SCV     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2287124..2297693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY96_RS11730 cysE 2288337..2288984 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  DYY96_RS11735 cysS 2288968..2290368 (+) 1401 WP_000631980.1 cysteine--tRNA ligase -
  DYY96_RS11740 - 2290361..2290765 (+) 405 WP_000370179.1 Mini-ribonuclease 3 -
  DYY96_RS11745 rlmB 2290773..2291519 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DYY96_RS11750 - 2291519..2292043 (+) 525 WP_000664731.1 NYN domain-containing protein -
  DYY96_RS11755 sigH 2292124..2292693 (+) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  DYY96_RS11760 rpmG 2292808..2292951 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  DYY96_RS11765 secE 2293007..2293189 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DYY96_RS11770 nusG 2293202..2293750 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DYY96_RS11775 rplK 2293931..2294353 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  DYY96_RS11780 rplA 2294561..2295253 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  DYY96_RS11790 rplJ 2295525..2296025 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  DYY96_RS11795 rplL 2296068..2296436 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DYY96_RS11800 - 2296611..2297219 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=1149220 DYY96_RS11755 WP_000872878.1 2292124..2292693(+) (sigH) [Staphylococcus aureus isolate 1549-SCV]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1149220 DYY96_RS11755 WP_000872878.1 2292124..2292693(+) (sigH) [Staphylococcus aureus isolate 1549-SCV]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment