Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DYY92_RS11760 Genome accession   NZ_LT992434
Coordinates   2292103..2292672 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-WT     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2287103..2297672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY92_RS11735 cysE 2288316..2288963 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  DYY92_RS11740 cysS 2288947..2290347 (+) 1401 WP_000631980.1 cysteine--tRNA ligase -
  DYY92_RS11745 - 2290340..2290744 (+) 405 WP_000370179.1 Mini-ribonuclease 3 -
  DYY92_RS11750 rlmB 2290752..2291498 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DYY92_RS11755 - 2291498..2292022 (+) 525 WP_000664731.1 NYN domain-containing protein -
  DYY92_RS11760 sigH 2292103..2292672 (+) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  DYY92_RS11765 rpmG 2292787..2292930 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  DYY92_RS11770 secE 2292986..2293168 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DYY92_RS11775 nusG 2293181..2293729 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DYY92_RS11780 rplK 2293910..2294332 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  DYY92_RS11785 rplA 2294540..2295232 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  DYY92_RS11795 rplJ 2295504..2296004 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  DYY92_RS11800 rplL 2296047..2296415 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DYY92_RS11805 - 2296590..2297198 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=1149179 DYY92_RS11760 WP_000872878.1 2292103..2292672(+) (sigH) [Staphylococcus aureus isolate 1549-WT]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1149179 DYY92_RS11760 WP_000872878.1 2292103..2292672(+) (sigH) [Staphylococcus aureus isolate 1549-WT]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment