Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DYY92_RS05820 Genome accession   NZ_LT992434
Coordinates   1112344..1112739 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-WT     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1107344..1117739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY92_RS05795 thiE 1107942..1108583 (-) 642 WP_000483162.1 thiamine phosphate synthase -
  DYY92_RS05800 thiM 1108585..1109376 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  DYY92_RS05805 thiD 1109360..1110190 (-) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DYY92_RS05810 tenA 1110183..1110872 (-) 690 WP_000396063.1 thiaminase II -
  DYY92_RS05815 sceD 1111260..1111955 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  DYY92_RS05820 ssb 1112344..1112739 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DYY92_RS05825 - 1112933..1113373 (+) 441 WP_000846751.1 YwpF-like family protein -
  DYY92_RS05830 fabZ 1113429..1113869 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DYY92_RS05835 murA 1113903..1115168 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DYY92_RS05840 - 1115279..1115512 (-) 234 WP_000384523.1 DUF1146 family protein -
  DYY92_RS05850 - 1116109..1116513 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1149170 DYY92_RS05820 WP_000932694.1 1112344..1112739(-) (ssb) [Staphylococcus aureus isolate 1549-WT]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1149170 DYY92_RS05820 WP_000932694.1 1112344..1112739(-) (ssb) [Staphylococcus aureus isolate 1549-WT]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment