Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DYY92_RS03100 Genome accession   NZ_LT992434
Coordinates   629535..630221 (-) Length   228 a.a.
NCBI ID   WP_072468915.1    Uniprot ID   A0A5F0HFN7
Organism   Staphylococcus aureus isolate 1549-WT     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624535..635221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY92_RS03080 rpsT 625449..625700 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  DYY92_RS03085 holA 625745..626719 (-) 975 WP_001282573.1 DNA polymerase III subunit delta -
  DYY92_RS03090 comEC 626776..628977 (-) 2202 WP_001622275.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DYY92_RS03095 - 628982..629443 (-) 462 WP_000439693.1 ComE operon protein 2 -
  DYY92_RS03100 comEA 629535..630221 (-) 687 WP_072468915.1 ComEA family DNA-binding protein Machinery gene
  DYY92_RS03105 - 630261..630977 (-) 717 WP_000084840.1 class I SAM-dependent DNA methyltransferase -
  DYY92_RS03110 rsfS 630980..631333 (-) 354 WP_001088020.1 ribosome silencing factor -
  DYY92_RS03115 yqeK 631334..631918 (-) 585 WP_001017837.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DYY92_RS03120 nadD 631908..632477 (-) 570 WP_000725165.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DYY92_RS03125 yhbY 632480..632770 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  DYY92_RS03130 aroE 632774..633580 (-) 807 WP_115657058.1 shikimate dehydrogenase -
  DYY92_RS03135 yqeH 633594..634694 (-) 1101 WP_001280146.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25812.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1149158 DYY92_RS03100 WP_072468915.1 629535..630221(-) (comEA) [Staphylococcus aureus isolate 1549-WT]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQAKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGENSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1149158 DYY92_RS03100 WP_072468915.1 629535..630221(-) (comEA) [Staphylococcus aureus isolate 1549-WT]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGCCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACACCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGAAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5F0HFN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment