Detailed information NTG1148952

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DTQ61_RS05150
• Genome accession: NZ_LT985192
• Coordinates: 1044783..1045655 (-)
• Length: 290 a.a.
• NCBI ID: WP_060404277.1
• Uniprot ID: A0AB35R099
• Organism: Pseudomonas syringae strain CFBP 2116
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1039783..1050655

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DTQ61_RS05115 (PSCFBP2116_00943)	-	1040199..1040732 (-)	534	WP_060404280.1	MOSC domain-containing protein	-
DTQ61_RS05120 (PSCFBP2116_00944)	-	1040729..1041358 (-)	630	WP_002553210.1	DUF1780 domain-containing protein	-
DTQ61_RS05125 (PSCFBP2116_00945)	-	1041402..1041788 (+)	387	WP_223282982.1	hypothetical protein	-
DTQ61_RS05130 (PSCFBP2116_00946)	-	1041785..1043257 (+)	1473	WP_060404279.1	tetratricopeptide repeat protein	-
DTQ61_RS05135	-	1043361..1043807 (+)	447	WP_099456531.1	hypothetical protein	-
DTQ61_RS05140 (PSCFBP2116_00947)	yacG	1043957..1044166 (-)	210	WP_060404278.1	DNA gyrase inhibitor YacG	-
DTQ61_RS05145 (PSCFBP2116_00948)	coaE	1044163..1044786 (-)	624	WP_057422075.1	dephospho-CoA kinase	-
DTQ61_RS05150 (PSCFBP2116_00949)	pilD	1044783..1045655 (-)	873	WP_060404277.1	prepilin peptidase	Machinery gene
DTQ61_RS05155 (PSCFBP2116_00950)	pilC	1045657..1046874 (-)	1218	WP_054995403.1	type II secretion system F family protein	Machinery gene
DTQ61_RS05160 (PSCFBP2116_00951)	pilB	1046877..1048571 (-)	1695	WP_060404276.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DTQ61_RS05165 (PSCFBP2116_00952)	-	1048795..1049223 (+)	429	WP_060404275.1	pilin	-
DTQ61_RS05170	-	1049519..1049848 (-)	330	Protein_939	DUF1523 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32057.19 Da
• Isoelectric Point: 8.5797

>NTDB_id=1148952 DTQ61_RS05150 WP_060404277.1 1044783..1045655(-) (pilD) [Pseudomonas syringae strain CFBP 2116]
MPLLDLLASSPLAFVTTCCILGLIIGSFLNVVVYRLPKMMERDWKAQSRELLGLPAEPDQPAFNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIINAFGLFNSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPFTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=1148952 DTQ61_RS05150 WP_060404277.1 1044783..1045655(-) (pilD) [Pseudomonas syringae strain CFBP 2116]
ATGCCCCTCCTCGACCTACTGGCCAGCTCCCCTCTGGCCTTCGTCACCACCTGCTGCATCCTCGGCCTCATCATCGGAAG
CTTCCTCAACGTAGTCGTCTACCGCCTTCCCAAAATGATGGAGCGCGACTGGAAAGCCCAATCCCGAGAACTGCTCGGCC
TGCCCGCAGAACCCGACCAGCCTGCCTTCAACCTGAACCGCCCTCGCTCAAGCTGCCCGCACTGCGCGCACAAGATCCGC
CCGTGGGAGAACCTGCCGGTCATCAGCTATCTGCTGCTGCGCGGTAAATGCTCACAATGCAAAGCCCCCATCAGCAAACG
CTACCCATTGGTAGAGCTGACCTGCGCAGTGTTGTCGGCCTACGTCGCCTGGCATTTCGGCTTCGGCTGGCAGGCAGCGG
CGATGCTGGTGTTGAGCTGGGGCCTGCTGGCGATGAGTCTGATCGACGCCGACCACCAGCTGTTACCTGACTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCATCAACGCCTTCGGGCTATTCAACTCGCTGAACGATGCGCTGTGGGGTGCAGT
GGCCGGGTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTTGGCGCATGGGGCGGCTGGCAGATTCTGCCGTTTACCATCCTGCTGTCGTCGCTGGTGGGC
GCGGTGCTTGGGGTGATCATGATGCGCGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.521	97.931	0.524
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter baumannii D1279779	52.555	94.483	0.497
pilD	Acinetobacter nosocomialis M2	51.46	94.483	0.486
pilD	Neisseria gonorrhoeae MS11	51.493	92.414	0.476