Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   DG022_RS08675 Genome accession   NZ_LT963436
Coordinates   1779603..1780169 (-) Length   188 a.a.
NCBI ID   WP_041079011.1    Uniprot ID   A0A380HNJ5
Organism   Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1774603..1785169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG022_RS08640 - 1774810..1776162 (-) 1353 WP_078073253.1 isochorismate synthase -
  DG022_RS08645 - 1776351..1777289 (+) 939 WP_047502489.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  DG022_RS08650 - 1777400..1777957 (-) 558 WP_078073254.1 GNAT family N-acetyltransferase -
  DG022_RS08655 - 1778135..1778347 (+) 213 WP_011303462.1 TM2 domain-containing protein -
  DG022_RS12565 - 1778468..1778557 (+) 90 WP_011303463.1 SAR1012 family small protein -
  DG022_RS08660 - 1778644..1779072 (-) 429 WP_002483731.1 organic hydroperoxide resistance protein -
  DG022_RS08675 comK/comK1 1779603..1780169 (-) 567 WP_041079011.1 competence protein ComK Regulator
  DG022_RS08680 - 1780421..1780639 (+) 219 WP_011303465.1 IDEAL domain-containing protein -
  DG022_RS08685 - 1780721..1781710 (-) 990 WP_002483734.1 lipoate--protein ligase -
  DG022_RS08690 - 1781911..1782096 (+) 186 WP_002483735.1 YkvS family protein -
  DG022_RS08695 - 1782102..1782704 (+) 603 WP_002483736.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  DG022_RS08700 - 1783297..1784805 (-) 1509 WP_011303467.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 22118.54 Da        Isoelectric Point: 9.5133

>NTDB_id=1148917 DG022_RS08675 WP_041079011.1 1779603..1780169(-) (comK/comK1) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
MIQPYIIKKGDMVLQPCSLSTGKYEGSYLLKYKDDSKVLKERVPKIIDRSCRFYGSSYHFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVHQIKPLKEKKCKVTFVDNQTIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKPQLNIYEALAKYSLFENKS

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1148917 DG022_RS08675 WP_041079011.1 1779603..1780169(-) (comK/comK1) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
ATGATTCAACCCTATATCATTAAAAAAGGGGATATGGTTTTACAACCATGCAGTTTATCAACTGGTAAGTATGAAGGTAG
TTATCTTTTAAAGTATAAGGATGACAGCAAAGTTCTAAAAGAACGTGTTCCAAAGATTATTGATCGATCGTGTAGATTTT
ATGGTAGTAGTTATCATTTTAAGAAAGAAGATACGATGAGAATTACTGGCATAAGCAGTAAACCCCCAATTTTATTTACT
CCACTTTTTCCTACTTATTTTTTCCCAACGCACTCTGATAGAAAAGAAGAAAATACTTGGATTAATATTCATTATGTTCA
CCAAATCAAACCACTAAAAGAAAAGAAATGTAAAGTGACATTTGTAGATAATCAAACAATTGTAGCTAACATTTCAGCAC
ATAGCATGCATCATCAATACCTAAATGGTATTTATTATTACTATATGATGGATAGGGCAGCAAGAGTTGCTACCTTTGAT
CCAGAATCTCCTATTGATTATACAAAACCTCAATTAAATATTTATGAAGCATTAGCAAAATATTCATTATTTGAAAATAA
ATCATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380HNJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

54.891

97.872

0.537
  comK/comK1 Staphylococcus aureus N315

54.891

97.872

0.537

Multiple sequence alignment