Detailed information NTG1148894

Bioinformatically predicted

Overview

• Name: ccrA
• Type: Machinery gene
• Locus tag: DG022_RS00085
• Genome accession: NZ_LT963436
• Coordinates: 15534..16883 (-)
• Length: 449 a.a.
• NCBI ID: WP_078073180.1
• Uniprot ID: -
• Organism: Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	15534..16883	15534..16883	within	0

Gene organization within MGE regions

Location: 15534..16883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DG022_RS00085	ccrA	15534..16883 (-)	1350	WP_078073180.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 52359.85 Da
• Isoelectric Point: 9.9623

>NTDB_id=1148894 DG022_RS00085 WP_078073180.1 15534..16883(-) (ccrA) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
MKQAIGYLRQSTTKQQSLAAQKQAIKTLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYH
NGTFTINKSEAPTVKAVFSYYLQGHGYKKIAQYLEADDKFINRKPYHVRNIIMNSNYCGRVINQYGQYDNMFPSIVSTNI
YEQAQAIRSQKQLKRTSSANQLKQKVKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASRFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLIEKLAQGKIDAETFREQTQSFRQQSKPITSIHTHQIQKALQ
NVMQQCFTLNILYPYIDEIHITKNKTLTSIYFKNEPLNIVNQTTQSSIA

Nucleotide

• Length: 1350 bp

>NTDB_id=1148894 DG022_RS00085 WP_078073180.1 15534..16883(-) (ccrA) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
ATGAAACAAGCAATAGGTTACTTACGACAGAGCACTACAAAGCAACAATCCCTAGCAGCACAGAAACAAGCCATCAAGAC
ATTAGCTGAAAAACACAATATTCAACACATCACATTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGAAACGGTT
ACCAGCAAATTACTGAACTGATTCAACAAGGACAATGTGATGTATTATGTTGCTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTGTGCCAAAAATATCATGTTCATATCTTAAGTGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTTAAACTTAATATTTTCATCAGCTTGGCCGAATTAGAATCTGATAATATTGGTGAAC
AAGTCAAAAATGGCCTTCGAGAAAAAGCAAAACAAGGTAAACTGATCACGACCCATGCACCCTTTGGCTATCACTATCAT
AATGGGACATTCACAATAAACAAGTCAGAAGCACCAACCGTAAAAGCTGTATTCAGTTACTATCTTCAGGGCCATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAAATTCATCAATCGTAAACCCTATCACGTACGTAATATTATCATGA
ACTCTAATTATTGTGGTCGAGTCATTAATCAATACGGACAATATGACAACATGTTCCCTTCTATTGTTTCGACTAATATA
TATGAACAAGCTCAAGCGATACGTTCACAAAAGCAACTCAAACGGACATCATCAGCTAATCAACTCAAACAAAAAGTCAA
ATGTCCTTATTGTGATTCAACACTAACTAATATGACCATTAGAAAAAAGCACCATACATTACGTTATTATGTTTGTCCTC
AAAATATGAATGCATCTCGTTTTGTCTGTGAATTCAAAGGGATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TATAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGTAAAATTGATGCAGAAACATTCA
GAGAACAAACGCAATCATTTCGACAACAGTCAAAACCTATAACATCAATCCATACGCATCAAATTCAAAAGGCTTTACAA
AATGTCATGCAACAATGTTTCACATTAAACATATTGTACCCTTACATTGATGAAATTCATATTACCAAAAATAAAACACT
TACGAGTATCTATTTCAAAAATGAGCCCTTAAACATCGTCAATCAAACAACACAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

• Resolvase, N terminal domain (Resolvase) (4-147)

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (262-322)

• Recombinase (Recombinase) (169-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrA	Staphylococcus aureus COL	88.641	100	0.886
ccrA	Staphylococcus aureus N315	77.951	100	0.78