Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   DG022_RS00085 Genome accession   NZ_LT963436
Coordinates   15534..16883 (-) Length   449 a.a.
NCBI ID   WP_078073180.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 10534..21883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG022_RS00060 - 11719..11922 (-) 204 WP_078073175.1 hypothetical protein -
  DG022_RS00065 - 12146..12649 (-) 504 WP_078073176.1 DUF1643 domain-containing protein -
  DG022_RS00070 - 12665..12976 (-) 312 WP_078073177.1 DUF960 family protein -
  DG022_RS00075 - 13072..13410 (-) 339 WP_078073178.1 SAUGI family uracil-DNA glycosylase inhibitor -
  DG022_RS00080 ccrB 13885..15513 (-) 1629 WP_078073179.1 cassette chromosome recombinase CcrB Machinery gene
  DG022_RS00085 ccrA 15534..16883 (-) 1350 WP_078073180.1 cassette chromosome recombinase CcrA Machinery gene
  DG022_RS00090 - 17032..17493 (-) 462 Protein_17 D-glutamate cyclase family protein -
  DG022_RS00095 - 17624..19330 (-) 1707 WP_069826673.1 BCCT family transporter -
  DG022_RS00100 - 19533..20153 (+) 621 WP_069826672.1 DUF4064 domain-containing protein -
  DG022_RS00105 - 20262..20483 (+) 222 WP_069826671.1 hypothetical protein -
  DG022_RS00110 - 20709..21143 (+) 435 WP_078073181.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52359.85 Da        Isoelectric Point: 9.9623

>NTDB_id=1148894 DG022_RS00085 WP_078073180.1 15534..16883(-) (ccrA) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
MKQAIGYLRQSTTKQQSLAAQKQAIKTLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYH
NGTFTINKSEAPTVKAVFSYYLQGHGYKKIAQYLEADDKFINRKPYHVRNIIMNSNYCGRVINQYGQYDNMFPSIVSTNI
YEQAQAIRSQKQLKRTSSANQLKQKVKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASRFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLIEKLAQGKIDAETFREQTQSFRQQSKPITSIHTHQIQKALQ
NVMQQCFTLNILYPYIDEIHITKNKTLTSIYFKNEPLNIVNQTTQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1148894 DG022_RS00085 WP_078073180.1 15534..16883(-) (ccrA) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
ATGAAACAAGCAATAGGTTACTTACGACAGAGCACTACAAAGCAACAATCCCTAGCAGCACAGAAACAAGCCATCAAGAC
ATTAGCTGAAAAACACAATATTCAACACATCACATTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGAAACGGTT
ACCAGCAAATTACTGAACTGATTCAACAAGGACAATGTGATGTATTATGTTGCTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTGTGCCAAAAATATCATGTTCATATCTTAAGTGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTTAAACTTAATATTTTCATCAGCTTGGCCGAATTAGAATCTGATAATATTGGTGAAC
AAGTCAAAAATGGCCTTCGAGAAAAAGCAAAACAAGGTAAACTGATCACGACCCATGCACCCTTTGGCTATCACTATCAT
AATGGGACATTCACAATAAACAAGTCAGAAGCACCAACCGTAAAAGCTGTATTCAGTTACTATCTTCAGGGCCATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAAATTCATCAATCGTAAACCCTATCACGTACGTAATATTATCATGA
ACTCTAATTATTGTGGTCGAGTCATTAATCAATACGGACAATATGACAACATGTTCCCTTCTATTGTTTCGACTAATATA
TATGAACAAGCTCAAGCGATACGTTCACAAAAGCAACTCAAACGGACATCATCAGCTAATCAACTCAAACAAAAAGTCAA
ATGTCCTTATTGTGATTCAACACTAACTAATATGACCATTAGAAAAAAGCACCATACATTACGTTATTATGTTTGTCCTC
AAAATATGAATGCATCTCGTTTTGTCTGTGAATTCAAAGGGATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TATAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGTAAAATTGATGCAGAAACATTCA
GAGAACAAACGCAATCATTTCGACAACAGTCAAAACCTATAACATCAATCCATACGCATCAAATTCAAAAGGCTTTACAA
AATGTCATGCAACAATGTTTCACATTAAACATATTGTACCCTTACATTGATGAAATTCATATTACCAAAAATAAAACACT
TACGAGTATCTATTTCAAAAATGAGCCCTTAAACATCGTCAATCAAACAACACAATCATCGATTGCTTAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

88.641

100

0.886
  ccrA Staphylococcus aureus N315

77.951

100

0.78

Multiple sequence alignment