Detailed information NTG1148893

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: DG022_RS00080
• Genome accession: NZ_LT963436
• Coordinates: 13885..15513 (-)
• Length: 542 a.a.
• NCBI ID: WP_078073179.1
• Uniprot ID: -
• Organism: Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	15534..16883	13885..15513	flank	21

Gene organization within MGE regions

Location: 13885..16883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DG022_RS00080	ccrB	13885..15513 (-)	1629	WP_078073179.1	cassette chromosome recombinase CcrB	Machinery gene
DG022_RS00085	ccrA	15534..16883 (-)	1350	WP_078073180.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62443.17 Da
• Isoelectric Point: 9.7656

>NTDB_id=1148893 DG022_RS00080 WP_078073179.1 13885..15513(-) (ccrB) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFGVVDVYADRGISGKSMNRPELQRLLKDANEGHIDSVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYGKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKNKPFSIGSITYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIISEGKHAPIISQELWDKVQVRKKQVSQKPQVHGKGTNLLTGIVHCPQCGAAMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQIYEIVKSNQVIQKVVERVNQDNQVDVAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQISNILRHIFQNIESMDKSQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPIDEVLLSTSSLFLPQTLYLQI

Nucleotide

• Length: 1629 bp

>NTDB_id=1148893 DG022_RS00080 WP_078073179.1 13885..15513(-) (ccrB) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGGTGTTGTAGATGTATACGCAGATAGAGGTA
TTTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCATATCGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAATACATCAGACTTACTGAAAATTGTCGAAGATTTACATAAACAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACGAGTAGCGGTAAGCTCATGTTACAAATACTTGCAAGCTTTTCTG
AATTTGAAAGAAACAATATTGTCGAGAACGTATTCATGGGACAAACCCGACGTGCTCAAGAAGGCTATTATCAAGGCAAC
TTGCCATTAGGCTATGGTAAGATACCAGATAATAAACATGAACTCATGATTAATCAACATGAAGCCAATATCGTTAAATA
CATCTTTGAATCATATGCGAAAGGACATGGATATCGTAAAATTGCTAATGCTCTCAACCATAAAGGTTATGTCACTAAAA
AAAATAAACCATTCAGTATTGGTTCAATAACTTATATACTATCCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAACGTCGTAAAGGACTGAATGATAAACCGATCATATCTGAGGGTAAGCACGCCCCTATTAT
TAGTCAAGAATTATGGGATAAAGTTCAAGTACGTAAAAAACAAGTCAGTCAAAAACCACAAGTTCACGGTAAAGGAACTA
ATCTATTAACAGGTATCGTTCATTGTCCCCAATGCGGAGCGGCTATGGCGGCAAGTAATACCACTAATACACTCAAAGAT
GGAACTAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTTCGAAACAAAGGCTCAAAGGTATGTTCAGCGAATAGTGT
TAGAGCCGATGTCATCGAAAAATATGTCATGGATCAAATATACGAAATTGTCAAAAGTAATCAAGTGATTCAAAAAGTTG
TCGAACGCGTCAATCAAGACAATCAAGTCGATGTAGCAGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAATTCAAACGATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGACATTACAAACCAAATGAATCAACTCAAGCACCAACAAAACCAAGAAAAACCAT
CTTACGATACGAAGCAAATATCCAATATCTTACGTCATATATTTCAAAACATAGAATCCATGGATAAATCACAACTCAAG
GCATTATATCTTACAGTCATTGACCGTATTGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTCAA
GCTCAATAATGAAATTATTAAACAACTCTTCAATAATACCCCAATCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTATCTTCAAATCTAA

Domains

Predicted by InterproScan.

• Recombinase (Recombinase) (180-280)

• Resolvase, N terminal domain (Resolvase) (11-156)

• Ogr/Delta-like zinc finger (Ogr_Delta) (301-356)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	85.978	100	0.86