Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C6H37_RS09635 Genome accession   NZ_LT963408
Coordinates   1915123..1915800 (+) Length   225 a.a.
NCBI ID   WP_003381119.1    Uniprot ID   -
Organism   Pseudomonas syringae group genomosp. 3 isolate CFBP6411     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1910123..1920800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H37_RS09625 (CFBP6411_01775) tssI 1910560..1912587 (-) 2028 WP_005739742.1 type VI secretion system tip protein VgrG -
  C6H37_RS09630 (CFBP6411_01776) comA 1912825..1915041 (+) 2217 WP_005739741.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C6H37_RS09635 (CFBP6411_01777) exbB 1915123..1915800 (+) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6H37_RS09640 (CFBP6411_01778) - 1915797..1916228 (+) 432 WP_003381117.1 ExbD/TolR family protein -
  C6H37_RS09645 (CFBP6411_01779) lpxK 1916228..1917223 (+) 996 WP_005739740.1 tetraacyldisaccharide 4'-kinase -
  C6H37_RS09650 (CFBP6411_01780) - 1917241..1917426 (+) 186 WP_003381112.1 Trm112 family protein -
  C6H37_RS09655 (CFBP6411_01781) kdsB 1917423..1918187 (+) 765 WP_005739739.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6H37_RS09660 (CFBP6411_01782) murB 1918222..1919241 (+) 1020 WP_005739738.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24257.56 Da        Isoelectric Point: 8.5248

>NTDB_id=1148850 C6H37_RS09635 WP_003381119.1 1915123..1915800(+) (exbB) [Pseudomonas syringae group genomosp. 3 isolate CFBP6411]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGVLASGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1148850 C6H37_RS09635 WP_003381119.1 1915123..1915800(+) (exbB) [Pseudomonas syringae group genomosp. 3 isolate CFBP6411]
GTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCCGATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGCCGCACCTGCTGGGTCAGGCATGGCAGTGGATTCAGGAAA
AGAAACTCGATAACGAAAAACTCAAGCAACTGCGCGCCGACTCGCCGCTGGGCGAAATCCTTGCCGCTGGCCTGGCCAAT
TCCAAGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGTGTCATCCATGACCTGGAACGCTACCT
GAGCGCGCTGGGCTCTATCGCAGCAATGGCCCCGTTGCTCGGTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCG
GTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTGCTGGCGAGCGGTATCTCCAAGGCACTGATCTGTACTGCG
TCGGGCCTTATCGTGGCAATCCCGGCGATCTTCTTTCACCGCTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCGATTCGTCTGGTTGAGGTGGTGCAGGGCGACCGTGATGTCGATCTGATCGACGCCAAGATCGACCTCA
AATCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment