Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MFPB19_RS05335 Genome accession   NZ_LT960784
Coordinates   1057155..1058030 (-) Length   291 a.a.
NCBI ID   WP_099713203.1    Uniprot ID   -
Organism   Latilactobacillus sakei isolate MFPB19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1052155..1063030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFPB19_RS05320 (MFPB19_1106) topA 1053390..1055474 (-) 2085 WP_016265142.1 type I DNA topoisomerase -
  MFPB19_RS05325 (MFPB19_1107) - 1055725..1056159 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  MFPB19_RS05330 (MFPB19_1108) - 1056188..1057054 (-) 867 WP_099713204.1 NAD(P)H-binding protein -
  MFPB19_RS05335 (MFPB19_1109) dprA 1057155..1058030 (-) 876 WP_099713203.1 DNA-processing protein DprA Machinery gene
  MFPB19_RS05340 (MFPB19_1110) - 1058085..1058846 (-) 762 WP_076632493.1 ribonuclease HII -
  MFPB19_RS05345 (MFPB19_1111) ylqF 1058848..1059699 (-) 852 WP_025015771.1 ribosome biogenesis GTPase YlqF -
  MFPB19_RS05350 (MFPB19_1112) lepB 1059831..1060361 (-) 531 WP_076632492.1 signal peptidase I -
  MFPB19_RS05355 (MFPB19_1113) - 1060386..1060610 (-) 225 WP_016265150.1 YozE family protein -
  MFPB19_RS05360 (MFPB19_1114) - 1060621..1061250 (-) 630 WP_076632491.1 YpmS family protein -
  MFPB19_RS05365 (MFPB19_1115) - 1061263..1062174 (-) 912 WP_231953419.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32103.13 Da        Isoelectric Point: 8.8338

>NTDB_id=1148429 MFPB19_RS05335 WP_099713203.1 1057155..1058030(-) (dprA) [Latilactobacillus sakei isolate MFPB19]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWALSALSALEIAQITRLPERYWPTFQASFQSTTLQRQCIDHEVRTT
YLTILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEV
ALQRGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLIT
ANLALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1148429 MFPB19_RS05335 WP_099713203.1 1057155..1058030(-) (dprA) [Latilactobacillus sakei isolate MFPB19]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGGCGTTATCGGCGTTATCGGCGTTAGAAATTGCGCAGATTACGCGCTTGCCGGAAC
GTTATTGGCCGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGACCATGAAGTTCGAACGACT
TATTTAACCATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGG
TGATTTAAGATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAG
AACAGTTATTACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTT
GCCTTGCAGCGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTT
ACAACAGGTAGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGCGCTATCAATTTCCAG
CCCGTAATAAAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCCCGGCACAAGAGTGGTAGCTTGATTACC
GCTAACTTGGCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAA
CCAATTAATCGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

97.938

100

0.979
  dprA Legionella pneumophila strain ERS1305867

36.806

98.969

0.364

Multiple sequence alignment