Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | LSAJ64_RS07430 | Genome accession | NZ_LT960781 |
| Coordinates | 1441505..1441810 (-) | Length | 101 a.a. |
| NCBI ID | WP_099960315.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain J64 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1436505..1446810
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSAJ64_RS07395 (LSAJ64_1494) | - | 1436944..1437309 (+) | 366 | WP_011374991.1 | DUF805 domain-containing protein | - |
| LSAJ64_RS07405 (LSAJ64_1496) | - | 1437852..1438310 (-) | 459 | WP_099960310.1 | laaL | - |
| LSAJ64_RS07410 (LSAJ64_1497) | - | 1438365..1439561 (-) | 1197 | WP_101377988.1 | acetate/propionate family kinase | - |
| LSAJ64_RS07415 (LSAJ64_1498) | - | 1439583..1440593 (-) | 1011 | WP_099947695.1 | class I SAM-dependent methyltransferase | - |
| LSAJ64_RS07420 (LSAJ64_1499) | - | 1440717..1441055 (-) | 339 | WP_035145011.1 | hypothetical protein | - |
| LSAJ64_RS07425 (LSAJ64_1500) | comGF | 1441018..1441530 (-) | 513 | WP_101377989.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| LSAJ64_RS07430 (LSAJ64_1501) | comGE | 1441505..1441810 (-) | 306 | WP_099960315.1 | type II secretion system protein | Machinery gene |
| LSAJ64_RS07435 (LSAJ64_1502) | comGD | 1441797..1442249 (-) | 453 | WP_099960316.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| LSAJ64_RS07440 (LSAJ64_1503) | comGC | 1442221..1442520 (-) | 300 | WP_099960317.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| LSAJ64_RS07445 (LSAJ64_1504) | comGB | 1442517..1443524 (-) | 1008 | WP_101377990.1 | type II secretion system F family protein | Machinery gene |
| LSAJ64_RS07450 (LSAJ64_1505) | comGA | 1443517..1444407 (-) | 891 | WP_016265378.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LSAJ64_RS07455 (LSAJ64_1506) | - | 1444522..1445253 (-) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LSAJ64_RS07460 (LSAJ64_1507) | - | 1445344..1445844 (-) | 501 | WP_099947696.1 | VanZ family protein | - |
| LSAJ64_RS07465 (LSAJ64_1508) | - | 1445941..1446315 (+) | 375 | WP_011375004.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 11466.48 Da Isoelectric Point: 10.9259
>NTDB_id=1148401 LSAJ64_RS07430 WP_099960315.1 1441505..1441810(-) (comGE) [Latilactobacillus sakei strain J64]
MFRSRPAFLLVENIIALTLILGACWLLTVSLLHFKQQQTLKQQEVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKVTTKAGESVAINWTTD
MFRSRPAFLLVENIIALTLILGACWLLTVSLLHFKQQQTLKQQEVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKVTTKAGESVAINWTTD
Nucleotide
Download Length: 306 bp
>NTDB_id=1148401 LSAJ64_RS07430 WP_099960315.1 1441505..1441810(-) (comGE) [Latilactobacillus sakei strain J64]
ATGTTCAGAAGTAGGCCGGCTTTTTTACTCGTTGAAAATATCATCGCCTTAACTTTAATATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGGAAGTAGCACAACAGGCCGTTCTGGCGATGG
CCGCCGAACAGTTGAGAGCGCATCAGACAGTGAAAAAACGGTGGCAAATGGGGCGAACAATCTATACGGTGACGGCTAAT
CAGCAGAAATTAAAGGTAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
ATGTTCAGAAGTAGGCCGGCTTTTTTACTCGTTGAAAATATCATCGCCTTAACTTTAATATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGGAAGTAGCACAACAGGCCGTTCTGGCGATGG
CCGCCGAACAGTTGAGAGCGCATCAGACAGTGAAAAAACGGTGGCAAATGGGGCGAACAATCTATACGGTGACGGCTAAT
CAGCAGAAATTAAAGGTAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Latilactobacillus sakei subsp. sakei 23K |
97.03 |
100 |
0.97 |