Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   VTAP4600_RS07515 Genome accession   NZ_LT960611
Coordinates   1683232..1686618 (+) Length   1128 a.a.
NCBI ID   WP_102522228.1    Uniprot ID   A0A2N8ZCG4
Organism   Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1678232..1691618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VTAP4600_RS07495 (VTAP4600_A1606) erpA 1678413..1678754 (-) 342 WP_102522224.1 iron-sulfur cluster insertion protein ErpA -
  VTAP4600_RS07500 (VTAP4600_A1607) hemL 1679134..1680429 (+) 1296 WP_102522225.1 glutamate-1-semialdehyde 2,1-aminomutase -
  VTAP4600_RS07505 (VTAP4600_A1609) - 1680829..1681914 (+) 1086 WP_102522226.1 AI-2E family transporter -
  VTAP4600_RS07510 (VTAP4600_A1610) rsmC 1681997..1683019 (+) 1023 WP_102522227.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  VTAP4600_RS07515 (VTAP4600_A1611) chiS 1683232..1686618 (+) 3387 WP_102522228.1 response regulator Regulator
  VTAP4600_RS07520 (VTAP4600_A1613) - 1687393..1689069 (+) 1677 WP_102522229.1 ABC transporter substrate-binding protein -
  VTAP4600_RS07525 (VTAP4600_A1614) - 1689230..1690216 (+) 987 WP_102522230.1 ABC transporter permease -
  VTAP4600_RS07530 (VTAP4600_A1615) - 1690219..1691244 (+) 1026 WP_102522231.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1128 a.a.        Molecular weight: 127116.42 Da        Isoelectric Point: 6.1091

>NTDB_id=1148310 VTAP4600_RS07515 WP_102522228.1 1683232..1686618(+) (chiS) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
MIRFHRKQKFKRLQHTLMVAFLALSIIPLTVIALFFLQSHSKDLQEQSTSHLISVRDSKKQQLQDYFQAKESETMGFVRS
ELAYASGGRFYGLVSAFRDLGADLDKARQHAQQRYIKGSGNQIRTSILRESSDFAGSERYRLLHKRYHWGYLELLKRSDF
DDILLVDLEGNVTYSVNKYDNFGTNLLTGRYKHSNLGKTFAHIQNLMEQAGPDSDEIPTVFSDFTLEGNEHVAWFAAPIL
QQGYLHSYAILRLPSTKLLKLFKDNTESNSIKSLLVGDDNQPRLLNLSQDDVIASQKIIDIALKGQTSVKSFDNAHGERV
IAAYTPIQVRDLRWALVTELPEKQAYARIHQLEKLFAVAMLIAIILVFICSHYLSNFITSPLLKLTWSAERVSAGDLEED
MFTTSRKDEIGRLAVSFERMQRSIRDKIQTIGKQNEELEQNLTIISQQNDELHLANKLKDEFLATTSHELRTPLHGMIGI
AEALISGANGTIPANQRHQLEIIINSGQRLATLVDDLLDYHKMRYGSLDIQTNAVNLSGATRLVLELSQHLIGNKPLRII
NQVPTELPLVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATILDDAIRIQVVDTGQGIPAEQLDHIFEPLIQAGQDSNR
YRQGSGLWLSISRQLVELMGGTLYVSSQPLVGTTFSFSLPLANEEEIATSQVQNTANHFQAPEQNDSNLGDNNALPDNPD
GPLLIVADDEPVNLQILDSFLRMEGYRVKTAQDGPEALELVMSEKPELLLLDVMMPGMSGYQVCEQLRQSYDHAELPVIM
LTALSQTNDRVKGFDSGANDYLTKPFNKLELASRIKAHLAASKAEQRRLENQQLQQELKQREVVEANLLETQGRLLEQLE
SAPEAIICINEDGRIRFANDSAAKLFKRSSEQLKRSQAEEIIAPKYLNLNDVHYCGDIDIYVGDKREHISSDILLLPKGS
GLRSMYIFNVGGGANTVRVNNLETAVEALSSYAFEGDKAKLQQLKELGGEFTRIADKVSGQGGDKQELMREILVDAMTTA
IDYWETDSGQSKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRKETLPKTPRWRTVLNSMDYILEHCNSATQQRAHLEVLRN
KIQKLLTS

Nucleotide


Download         Length: 3387 bp        

>NTDB_id=1148310 VTAP4600_RS07515 WP_102522228.1 1683232..1686618(+) (chiS) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
ATGATACGATTTCATCGAAAGCAAAAATTCAAACGCCTACAACACACCTTAATGGTCGCATTCTTGGCGCTCAGCATTAT
CCCATTAACCGTTATCGCACTCTTTTTTCTCCAGTCTCACAGTAAAGACTTACAAGAACAAAGTACCTCACACCTGATCT
CGGTTAGAGATTCGAAAAAGCAGCAACTGCAAGATTACTTTCAAGCAAAAGAATCTGAAACCATGGGATTTGTACGCTCC
GAACTTGCCTACGCAAGTGGTGGACGATTCTATGGATTGGTCAGCGCATTTAGAGACTTGGGCGCAGACCTTGATAAAGC
ACGTCAACACGCTCAGCAACGTTATATCAAGGGTTCTGGAAATCAAATAAGGACTTCTATTTTAAGAGAGTCGAGTGATT
TTGCAGGAAGTGAACGTTATCGCCTTTTGCATAAACGTTATCACTGGGGCTATTTAGAACTTCTTAAACGTTCGGATTTT
GATGACATTCTTTTGGTTGATCTAGAAGGCAACGTTACCTATTCAGTCAACAAATACGATAATTTTGGTACCAACCTACT
GACTGGTCGCTATAAGCACAGCAATTTAGGCAAAACTTTTGCCCATATTCAAAACCTCATGGAACAAGCTGGCCCAGATA
GCGATGAAATCCCGACCGTTTTTTCCGACTTCACCCTAGAAGGTAACGAACACGTAGCTTGGTTTGCCGCGCCAATCTTG
CAGCAAGGTTATTTACACAGCTATGCGATTTTGCGACTACCAAGCACTAAATTATTAAAACTGTTCAAAGACAATACGGA
ATCTAACTCCATCAAAAGCTTGCTGGTTGGTGATGATAACCAGCCTCGGTTGTTGAACTTGTCTCAAGATGATGTCATTG
CTAGCCAAAAAATCATCGATATTGCATTAAAAGGCCAAACCTCAGTGAAGAGCTTTGACAATGCACATGGTGAACGAGTC
ATCGCCGCTTATACTCCGATTCAAGTGCGGGATCTTCGCTGGGCATTAGTCACTGAGTTACCAGAAAAGCAAGCTTACGC
TCGCATCCACCAACTAGAAAAATTGTTTGCTGTGGCCATGCTGATTGCCATTATATTGGTATTTATCTGCTCTCATTATC
TTTCTAACTTCATCACCTCGCCACTACTAAAACTCACTTGGTCCGCGGAACGAGTGTCGGCTGGTGACCTCGAAGAAGAT
ATGTTTACCACAAGCAGGAAAGACGAAATTGGACGCTTAGCGGTGAGCTTTGAGCGAATGCAGCGCTCTATTCGCGATAA
AATTCAAACAATTGGTAAACAAAACGAAGAATTAGAGCAAAACCTCACCATCATTTCTCAACAAAATGATGAACTCCACT
TAGCCAATAAGCTCAAAGATGAATTTCTTGCGACTACCTCCCATGAGCTTCGCACTCCCTTACATGGCATGATTGGTATC
GCAGAAGCCCTTATTTCAGGTGCAAATGGCACGATTCCCGCAAATCAAAGGCATCAGTTAGAAATCATCATCAACAGCGG
CCAACGATTAGCAACGCTCGTTGATGACTTACTGGATTATCATAAGATGCGCTATGGCAGTTTAGATATCCAAACCAATG
CCGTGAACCTTTCAGGCGCGACGCGATTAGTGCTGGAGTTATCACAGCACCTAATCGGTAATAAGCCTCTGCGTATTATT
AATCAGGTGCCTACAGAGCTTCCGTTGGTGAGCGCCGATCCACAGCGTTTAGAGCAAGTCCTATACAACCTCATTGGTAA
CGCCATTAAGTACACCAGCGAGGGTAAAATCGTTATCTCTGCCACCATTTTAGATGACGCCATTCGAATTCAAGTGGTTG
ATACCGGCCAAGGTATCCCCGCAGAACAGCTGGATCATATATTCGAACCTCTCATCCAAGCAGGTCAGGACTCCAACCGC
TATCGTCAGGGATCTGGTTTATGGCTTTCAATCAGCCGCCAATTGGTTGAGTTAATGGGCGGAACCTTGTATGTAAGTAG
CCAACCGCTTGTTGGAACAACATTCAGTTTTTCATTGCCACTGGCGAACGAAGAAGAAATTGCAACTTCACAAGTTCAAA
ATACCGCAAATCACTTTCAAGCCCCAGAGCAAAACGACTCTAACCTTGGCGACAATAATGCGCTGCCTGACAACCCGGAT
GGCCCACTGCTGATTGTGGCTGATGACGAGCCCGTAAATCTTCAAATCCTTGACAGTTTCTTGAGAATGGAAGGCTATCG
AGTTAAAACAGCACAAGACGGCCCTGAAGCTCTTGAGTTGGTCATGTCAGAGAAACCTGAACTGCTCTTACTCGATGTTA
TGATGCCAGGAATGAGTGGTTACCAGGTCTGTGAACAACTAAGGCAAAGCTACGATCATGCTGAATTGCCCGTCATTATG
CTGACAGCACTTAGTCAGACTAACGATCGAGTTAAAGGCTTCGATTCAGGCGCTAACGACTATCTGACGAAGCCATTTAA
TAAGTTAGAACTGGCATCTCGCATCAAGGCTCACCTCGCGGCAAGCAAAGCTGAACAAAGGCGACTAGAAAACCAACAAC
TGCAACAAGAACTTAAGCAAAGAGAAGTCGTCGAAGCGAACTTACTGGAAACACAAGGCCGTTTATTGGAGCAGTTAGAA
TCTGCTCCTGAAGCGATAATTTGCATTAATGAAGACGGACGCATTCGCTTTGCCAACGATTCTGCAGCCAAATTATTCAA
GCGTTCGTCAGAGCAATTGAAACGCAGTCAGGCGGAAGAAATCATTGCTCCAAAATACCTTAACCTTAATGACGTGCATT
ATTGTGGCGACATTGATATTTATGTTGGCGACAAACGAGAGCATATATCCAGCGATATCCTGCTGCTTCCTAAAGGTTCA
GGCCTACGCTCTATGTATATATTTAATGTAGGTGGTGGCGCCAATACGGTACGAGTCAATAACTTAGAAACCGCAGTCGA
AGCGCTTTCTAGTTATGCTTTTGAAGGTGACAAAGCAAAATTGCAACAACTTAAGGAGTTAGGCGGTGAGTTTACCCGCA
TAGCCGACAAGGTATCTGGACAAGGTGGTGATAAACAAGAACTGATGCGCGAGATACTGGTTGATGCAATGACTACCGCT
ATCGACTACTGGGAAACAGACAGTGGTCAAAGTAAGTTTGCTTTTGCTGAACAAAGTGGCTTGTGGCGCGTTTATCTAGA
CCGTAGCACACTGCAAACCCGTACATTAGATAAATACTTACGCAAAGAAACCCTACCTAAGACTCCTCGTTGGCGTACTG
TGCTCAATTCTATGGATTACATCCTTGAGCATTGTAATAGCGCAACCCAACAACGTGCTCATTTAGAGGTTCTGAGAAAT
AAGATACAAAAGCTGCTTACCAGTTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(573-682)

PAS fold (PAS)

(876-916)

HAMP domain (HAMP)

(374-426)

His Kinase A (phospho-acceptor) domain (HisKA)

(459-524)

Response regulator receiver domain (Response_reg)

(725-835)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8ZCG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

71.568

100

0.716

Multiple sequence alignment